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stable

Getting started

  • Installation/Setp up
  • Data Preparation
  • SEPIA header
  • SEPIA Output Files
  • Release note

Graphical User Interface (GUI)

  • SEPIA (One-stop QSM processing)
  • Phase Unwarpping Standalone
  • Background Magnetic Field Removal Standalone
  • QSM Standalone

Supported algorithms in SEPIA

  • Phase Unwarpping Algorithms
  • Background Magnetic Field Removal Algorithms
  • QSM Algorithms
  • SWI/SMWI Algorithms
  • R2* Algorithms
    • Closed-form solutino using trapezoidal approximation
    • Algorithm for fast monoexponential fitting based on Auto-Regression on Linear Operations (ARLO) of data
    • Closed-form solution using Geometric Sum
    • Closed-form solution using Sequence of Product
    • Linear regression
    • Non-linear least square
  • Subcortical structure segmentation in SEPIA
  • Weightings in SEPIA
  • Lookup table of algorithm parameters

Demonstration

  • Choosing a right phase unwrapping method for your data

Tutorial

  • SEPIA 101 - First QSM with SEPIA
  • Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 1
  • Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 2
  • (f)MRI Toolkit 2019

Acknowledgements and References

  • Acknowledgments
  • References
SEPIA
  • Docs »
  • R2* Algorithms
  • Edit on GitHub

R2* Algorithms¶

Supported algorithms in SEPIA¶

  • Closed-form solutino using trapezoidal approximation
  • Algorithm for fast monoexponential fitting based on Auto-Regression on Linear Operations (ARLO) of data
  • Closed-form solution using Geometric Sum
  • Closed-form solution using Sequence of Product
  • Linear regression
  • Non-linear least square
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© Copyright 2019, Kwok-Shing Chan Revision c303530b.

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