Acknowledgments¶
The methods and algorithms provided with SEPIA are contributed by:
MEDI Toolbox developed by
Weill Cornell MRI lab
- DICOM reader
- Matlab interface of using FSL’s brain extraction
- Combination of echo phase using non-linear fitting
- Laplacian phase unwrapping
- Region growing phase unwrapping
- Graphcut phase unwrapping
- Laplacian boundary value (LBV) background field removal
- Projection onto dipole field (PDF) background field removal
- Morphology enabled dipole inversion QSM
- Lateral ventricle masking
STI Suite developed by
Hongjiang Wei, PhD - University of California Berkeley, CA, USA
Wei Li, PhD, - University Texas Health Science Center at San Antonio Research Imaging Institute, San Antonio, TX, USA
Chunlei Liu, PhD - University of California Berkeley, CA, USA
- Laplacian phase unwrapping
- VSHARP background field removal
- iHARPERELLA background field removal
- iLSQR QSM
- Star-QSM
FANSI Toolbox developed by
Carlos Milovic, PhD - Biomedical Imaging Center at Pontificia Universidad Católica de Chile
Berkin Bilgic, PhD - Martinos Center for Biomedical Imaging, Harvard Medical School, MA, USA
Bo Zhao, PhD - Martinos Center for Biomedical Imaging, Harvard Medical School, MA, USA
Julio Acosta-Cabronero, PhD - Wellcome Trust Centre for Neuroimaging, Institute of Neurology, University College London, London, UK, and German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany
Cristian Tejos, PhD - Department of Electrical Engineering, Pontificia Universidad Catolica de Chile, Santiago, Chile and the Biomedical Imaging Center at Pontificia Universidad Católica de Chile
- FANSI QSM (including both linear and non-linear solvers, and TV and TGV regularisation options)
SEGUE developed by
Anita Karsa, PhD - University College London, UK Karin Shmueli, PhD - University College London, UK
MRI Susceptibility Calculation Methods developed by
Karin Shmueli’s group in UCL, UK
ROMEO developed by
ROMEO development team