SEPIA

Getting started

Download
Installation/Setp up
Data Preparation
SEPIA header
SEPIA Output Files
Release note

Graphical User Interface (GUI)

SEPIA (One-stop QSM processing)
Phase Unwarpping Standalone
Background Magnetic Field Removal Standalone
QSM Standalone

Supported algorithms in SEPIA

Phase Unwarpping Algorithms
Background Magnetic Field Removal Algorithms
QSM Algorithms
SWI/SMWI Algorithms
R2* Algorithms
Subcortical structure segmentation in SEPIA
Weightings in SEPIA
Lookup table of algorithm parameters

Demonstration

Choosing a right phase unwrapping method for your data

Tutorial

SEPIA 101 - First QSM with SEPIA
Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 1
Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 2
(f)MRI Toolkit 2019
(f)MRI Toolkit 2025

Acknowledgements and References

Acknowledgments
References

SEPIA

R2* Algorithms
Linear regression
View page source

Linear regression

Mono-exponential R2* fitting with a linear model (in Logarithm space)

../../_images/linear.png

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© Copyright 2019, Kwok-Shing Chan.

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