Acknowledgments

The methods and algorithms provided with SEPIA are contributed by:

MEDI Toolbox developed by

Weill Cornell MRI lab

• DICOM reader

• Matlab interface of using FSL’s brain extraction

• Combination of echo phase using non-linear fitting

• Laplacian phase unwrapping

• Region growing phase unwrapping

• Graphcut phase unwrapping

• Laplacian boundary value (LBV) background field removal

• Projection onto dipole field (PDF) background field removal

• Morphology enabled dipole inversion QSM

• Lateral ventricle masking

STI Suite developed by

Hongjiang Wei, PhD - University of California Berkeley, CA, USA

Wei Li, PhD, - University Texas Health Science Center at San Antonio Research Imaging Institute, San Antonio, TX, USA

Chunlei Liu, PhD - University of California Berkeley, CA, USA

• Laplacian phase unwrapping

• VSHARP background field removal

• iHARPERELLA background field removal

• iLSQR QSM

• Star-QSM

FANSI Toolbox developed by

Carlos Milovic, PhD - Biomedical Imaging Center at Pontificia Universidad Católica de Chile

Berkin Bilgic, PhD - Martinos Center for Biomedical Imaging, Harvard Medical School, MA, USA

Bo Zhao, PhD - Martinos Center for Biomedical Imaging, Harvard Medical School, MA, USA

Julio Acosta-Cabronero, PhD - Wellcome Trust Centre for Neuroimaging, Institute of Neurology, University College London, London, UK, and German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany

Cristian Tejos, PhD - Department of Electrical Engineering, Pontificia Universidad Catolica de Chile, Santiago, Chile and the Biomedical Imaging Center at Pontificia Universidad Católica de Chile

• FANSI QSM (including both linear and non-linear solvers, and TV and TGV regularisation options)

SEGUE developed by

Anita Karsa, PhD - University College London, UK Karin Shmueli, PhD - University College London, UK

MRI Susceptibility Calculation Methods developed by

Karin Shmueli’s group in UCL, UK

ROMEO developed by

ROMEO development team