(f)MRI Toolkit 2023
Objectives
Understanding the data needed for R2* and QSM mapping;
Gaining experience in basic QSM processing and some of the intermediate steps and data generated;
Generating SWI images from multi-echo data;
Target Audience
who is new to SEPIA
who wants to learn ao to create an R2* or QSM pipeline using SEPIA
Estimated Time
About 1 hour
Introduction
In this tutorial, we will discuss the data required to obtain R2* and quantitative susceptibility mapping (QSM). This are two qunatitative methods that give insight to the tissue magnetic properties.
Exercises
- Let’s begin with the following exercises:
1 to familiarize you with Multi-Echo data;
2 to start SEPIA and obtain an R2* map;
3 to run a complete QSM pipeline in SEPIA and visualize intermediate data;
4 to rerun the final step of QSM and compare various quantitative maps;
5 to use SEPIA to obtain synthetic images also derived from the same multi-echo data