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Getting started

  • Download
  • Installation/Setp up
  • Data Preparation
  • SEPIA header
  • SEPIA Output Files
  • Release note

Graphical User Interface (GUI)

  • SEPIA (One-stop QSM processing)
  • Phase Unwarpping Standalone
  • Background Magnetic Field Removal Standalone
  • QSM Standalone

Supported algorithms in SEPIA

  • Phase Unwarpping Algorithms
  • Background Magnetic Field Removal Algorithms
  • QSM Algorithms
  • SWI/SMWI Algorithms
    • SWI (2D Hamming)
    • CLEAR-SWI
    • SMWI
  • R2* Algorithms
  • Subcortical structure segmentation in SEPIA
  • Weightings in SEPIA
  • Lookup table of algorithm parameters

Demonstration

  • Choosing a right phase unwrapping method for your data

Tutorial

  • SEPIA 101 - First QSM with SEPIA
  • Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 1
  • Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 2
  • (f)MRI Toolkit 2019
  • (f)MRI Toolkit 2025

Acknowledgements and References

  • Acknowledgments
  • References
SEPIA
  • SWI/SMWI Algorithms
  • CLEAR-SWI
  • View page source

CLEAR-SWI

Reference: Korbinian Eckstein, Beata Bachrata, Gilbert Hangel, Georg Widhalm, Christian Enzinger, Markus Barth, Siegfried Trattnig, Simon Daniel Robinson, 2021. Improved susceptibility weighted imaging at ultra-high field using bipolar multi-echo acquisition and optimized image processing: CLEAR-SWI

../../_images/CELARSWI.png

Pleas refer to https://github.com/korbinian90/CLEARSWI.jl to see more information regarding the options/parameters of this method.

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© Copyright 2019, Kwok-Shing Chan.

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