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Getting started

  • Download
  • Installation/Setp up
  • Data Preparation
  • SEPIA header
  • SEPIA Output Files
  • Release note

Graphical User Interface (GUI)

  • SEPIA (One-stop QSM processing)
  • Phase Unwarpping Standalone
  • Background Magnetic Field Removal Standalone
  • QSM Standalone

Supported algorithms in SEPIA

  • Phase Unwarpping Algorithms
  • Background Magnetic Field Removal Algorithms
  • QSM Algorithms
  • SWI/SMWI Algorithms
    • SWI (2D Hamming)
    • CLEAR-SWI
    • SMWI
  • R2* Algorithms
  • Subcortical structure segmentation in SEPIA
  • Weightings in SEPIA
  • Lookup table of algorithm parameters

Demonstration

  • Choosing a right phase unwrapping method for your data

Tutorial

  • SEPIA 101 - First QSM with SEPIA
  • Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 1
  • Integration of New Phase unwrapping/BFR/QSM Method in SEPIA: Part 2
  • (f)MRI Toolkit 2019
  • (f)MRI Toolkit 2025

Acknowledgements and References

  • Acknowledgments
  • References
SEPIA
  • SWI/SMWI Algorithms
  • SMWI
  • View page source

SMWI

Reference: Gho, S.-M., Liu, C., Li, W., Jang, U., Kim, E.Y., Hwang, D., Kim, D.-H., 2014. Susceptibility map-weighted imaging (SMWI) for neuroimaging. Magnetic resonance in medicine 72, 337–346.

../../_images/smwi.png
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© Copyright 2019, Kwok-Shing Chan.

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